PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00149g01007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 239aa    MW: 27326.8 Da    PI: 9.3921
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00149g01007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.5e-21100159357
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               +R+++t+eq+ +Le l++   r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  Peinf101Scf00149g01007.1 100 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITLQLgkygKIEGKNVFYWFQNHKARERQ 159
                               7*****************99**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-1295165IPR009057Homeodomain-like
PROSITE profilePS5007110.07495160IPR001356Homeobox domain
SMARTSM003899.0E-797164IPR001356Homeobox domain
PfamPF000461.3E-18100159IPR001356Homeobox domain
CDDcd000863.66E-5100161No hitNo description
Gene3DG3DSA:1.10.10.601.6E-7101159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MYMGSSAGSL SMKVHQFTRG FLEHNDAATP SLSLGCKRLR PLAPKLTTNN NDSINVTPPP  60
FDLKSFIRPE SCSNTSPGKL SFINDDKKES SQVESHPGGT RWNPTQEQIG ILEMLYRGGM  120
RTPNAQQIEQ ITLQLGKYGK IEGKNVFYWF QNHKARERQK QKRNSMGLSQ SPRTPPAIVT  180
SPLTFDTRGE VVRDEDSPYK RKCRTWTFEY LEEEEKRNCR EDASDRTLEL FPLHPEGMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3590060.0EU359006.1 Petunia x hybrida WOX4 (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487428.11e-144PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J91e-78WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLC0IN091e-178C0IN09_PETHY; WOX4
STRINGPGSC0003DMT4000206621e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61862335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.17e-80WUSCHEL related homeobox 4